PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012185.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 114aa MW: 12831.5 Da PI: 9.7229

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012185.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37.5	6.5e-12	41	92	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp ++r +a++++ eA +r++dPvyG+vgvi+ lqq++ + ela+++++ Aco012185.1 41 LPVHQRAQAAEAMSAEAYWRVQDPVYGSVGVINLLQQHIYMNQRELARTRAH 92 6889*******************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.759	23	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-10	41	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MSTSSHNSNN TSPSPIINES NQRRCAACKY LRKRCSRDCQ LPVHQRAQAA EAMSAEAYWR 60 VQDPVYGSVG VINLLQQHIY MNQRELARTR AHIAIHSPTR GPCSPWAGLW TSPI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083393.1	4e-74	LOB domain-containing protein 24-like
TrEMBL	A0A199W1I4	3e-79	A0A199W1I4_ANACO; LOB domain-containing protein 24 (Fragment)
STRING	XP_008801576.1	3e-31	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	9e-16	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Aco012185.1