PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012193.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 238aa MW: 26497.2 Da PI: 5.9473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012193.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	5e-06	55	89	5	32
HHHHHHHHHHHHHHHHHHHHCTSCC.C........ CS HLH 5 hnerErrRRdriNsafeeLrellPk.as......k 32 + ++Er RR+++N+++ Lr+ +P+ + Aco012193.1 55 NIMVERDRRRKLNERLYALRSAVPNiTKelqeqeR 89 6789********************95546655440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.458	50	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-8	53	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-5	56	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDDMKGEYDL YWETKRFLES EELESMWGIE QAISGSYASS SSSVDVVAPS SAAKNIMVER 60 DRRRKLNERL YALRSAVPNI TKELQEQERR MQEEISKLES EKTSIRDVVP IIERDDLLVP 120 QRKKRTTQSS SSLALGSSGS SSLEVTQLRV SKVGERASIV EITCNKRRGS MVKLCEVFHS 180 LNLKIITANI TCVPGSISHI LLVESEGMEN AQMREKVAAA VAEVDAPRSL MSNISLQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082978.1	1e-129	transcription factor bHLH35-like isoform X2
TrEMBL	A0A199W2C3	1e-119	A0A199W2C3_ANACO; Transcription factor bHLH35 (Fragment)
STRING	XP_008811438.1	2e-79	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	4e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco012193.1