PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012198.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HB-other
Protein Properties Length: 675aa    MW: 77191.9 Da    PI: 10.0758
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012198.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.73.5e-12437482853
                  -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                   ++ +++L e+F++n  ps++ re L+k+lgL+ ++V  WF+N R+
  Aco012198.1 437 PPNAVQRLREVFAENELPSKDVRENLSKQLGLSAEKVGKWFKNARY 482
                  578899***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-13423481IPR009057Homeodomain-like
PROSITE profilePS5007112.892427487IPR001356Homeobox domain
SuperFamilySSF466894.28E-11428489IPR009057Homeodomain-like
SMARTSM003891.3E-10429491IPR001356Homeobox domain
CDDcd000866.01E-9430482No hitNo description
PfamPF000469.8E-10436482IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MHSSEKNLVF YTSKKSPILK KELQSNLNSS SLSKHHRKFL NNARKNTRYS HLRKKRIRKN  60
IQNSKLVRSQ QKVAECSSIT GRDFLPSTSK QSRSMAFGGH SKSKAHHAVT KVNKKKRRRN  120
KRDKGDWDEA SRLRSRARYL LIKMKHAQNL IDAYSGDGWN GQSREKIKPE KELQRAEKQI  180
LNCRHGIRDV IRQLDLLSSV GSIEDSVMYP DGSVFHEHVC TSHIISFVQN ANLVKLFQKM  240
TLYYVMGLAT VDFTRNDIFK EEVNRPEANN SYLNPADEWP SEDSEDEDYD PESNENSGEK  300
IGGDESFSND SSSSCSLFYS SDDAISYGES EHHIDADFVD LIVNTDTGEI NSCETVSYRR  360
QRRDVDYKKL HDEMFGKDLA ENEEQSEDED WGPHKRKKRK IESDADTNVD NSGNEDTCSK  420
MIGEKISHDK KRLFRIPPNA VQRLREVFAE NELPSKDVRE NLSKQLGLSA EKVGKWFKNA  480
RYTALKIRKA GITKVSDATL VPKSSRFSHG KAEISAGVAS MDNSYYLPLS AIIRVGKNLK  540
RNLPERNKKS PTNLFRKHPK KATNGRSFDK IQAIIPESRS LSKRHLIEHP RKQRTSETTF  600
VGGRTSASPA EKKAEEDRLY FHVLERICAL QDRIRSMKKA FESREDTEHL PAKPNSVVKN  660
VIYVPVAELK EKTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118KKKRRR
2113121KKKRRRNKR
3114121KKRRRNKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082755.10.0pathogenesis-related homeodomain protein isoform X2
TrEMBLA0A199W3630.0A0A199W363_ANACO; Pathogenesis-related homeodomain protein
STRINGXP_008798084.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-57pathogenesis related homeodomain protein A