PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012211.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 337aa MW: 36316.8 Da PI: 8.3178

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012211.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.7e-51	18	138	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++ Aco012211.1 18 LPPGFRFHPTDEELITYYLTHKISEANFSA-RAIAEVDLNKCEPWDLPSKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSqTS 114 79************************99.89***********99999************************************98677 PP NAM 98 elvglkktLvfykgrapkgektdW 121 elvg+kktLvfykgrap+gekt+W Aco012211.1 115 ELVGMKKTLVFYKGRAPRGEKTNW 138 88******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-54	16	149	IPR003441	NAC domain
PROSITE profile	PS51005	46.279	18	164	IPR003441	NAC domain
Pfam	PF02365	4.2E-23	19	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEGGGGGGGG GKNSEESLPP GFRFHPTDEE LITYYLTHKI SEANFSARAI AEVDLNKCEP 60 WDLPSKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFN SQTSELVGMK 120 KTLVFYKGRA PRGEKTNWDE WVVCRVFMKS SGGKKYPSSN THHPRGGGAH PYALDHLGPP 180 LLPSLVPADP FSRSAYLAAA TAELAELSRF TRGGAAHHPA FATHIQPHPA AFVGGPAAPS 240 AVPFALSGLN LNLGAPPPPA PILRGMSMQL NQPMQVLADQ QQQQQQQQHA SVLTNCAGMA 300 GDGGFGTADM SAAGTGIRYH QNLDSCVELE GYWPSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-50	14	155	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-50	14	155	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-50	14	155	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-50	14	155	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-50	14	155	16	174	NAC domain-containing protein 19
3swm_B	3e-50	14	155	16	174	NAC domain-containing protein 19
3swm_C	3e-50	14	155	16	174	NAC domain-containing protein 19
3swm_D	3e-50	14	155	16	174	NAC domain-containing protein 19
3swp_A	3e-50	14	155	16	174	NAC domain-containing protein 19
3swp_B	3e-50	14	155	16	174	NAC domain-containing protein 19
3swp_C	3e-50	14	155	16	174	NAC domain-containing protein 19
3swp_D	3e-50	14	155	16	174	NAC domain-containing protein 19
4dul_A	3e-50	14	155	13	171	NAC domain-containing protein 19
4dul_B	3e-50	14	155	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081419.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	2e-72	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A199W383	0.0	A0A199W383_ANACO; NAC domain-containing protein 100
STRING	OMERI07G04420.1	1e-128	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-83	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Aco012211.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]