PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012259.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 481aa MW: 51699.9 Da PI: 7.3513

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012259.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	9.2e-08	43	63	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Aco012259.1 43 PCPDFRK-GACRRGDLCEYAHG 63 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	9.5E-5	38	64	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	42	65	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-6	43	63	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.169	43	65	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	73	73	96	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CMPCPDFRKG ACRRGDLCEY 60 AHGVFECWLH PAQYRTRICK DGPACARCVC FFAHSPDELR PIFVSTGSAV PSPRSSDFMP 120 MPMPPASPSS SSSSSSLPSA GMPPLSPSAA GSSSAPLGCA GWPQPSVPAL HLPGSVLQSS 180 RLRASLSARD VQVADDFSSL MSDYDYDYDA LLRGNDLSHS RLGASAGNRM IARALTLAPA 240 NLDDLFSAEI ASSPNYSSDQ GAIFSPSHKS AILHQFQQQQ QNLFSPKAVD AQQLSPHSSL 300 LQASLGIGSP GRMSPRSMEP ISPMNSHFAA LVQREKQQQQ QQQTLRSLSS RDLGSGTSLI 360 VGSPVNSSWP NWGSPSRAPD WEVNSEELGR LQRSSSFELR SGGGEEPDLS WVHSLVKESP 420 PEKPVGTGSA HASAGRSNLM PAGVIPGGEV PNSNLHMGGL DQAADVGALL EQMQLERKVV 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CMPCPDFRKG ACRRGDLCEY  60
AHGVFECWLH PAQYRTRICK DGPACARCVC FFAHSPDELR PIFVSTGSAV PSPRSSDFMP  120
MPMPPASPSS SSSSSSLPSA GMPPLSPSAA GSSSAPLGCA GWPQPSVPAL HLPGSVLQSS  180
RLRASLSARD VQVADDFSSL MSDYDYDYDA LLRGNDLSHS RLGASAGNRM IARALTLAPA  240
NLDDLFSAEI ASSPNYSSDQ GAIFSPSHKS AILHQFQQQQ QNLFSPKAVD AQQLSPHSSL  300
LQASLGIGSP GRMSPRSMEP ISPMNSHFAA LVQREKQQQQ QQQTLRSLSS RDLGSGTSLI  360
VGSPVNSSWP NWGSPSRAPD WEVNSEELGR LQRSSSFELR SGGGEEPDLS WVHSLVKESP  420
PEKPVGTGSA HASAGRSNLM PAGVIPGGEV PNSNLHMGGL DQAADVGALL EQMQLERKVV  480
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662927	0.0	KM662927.1 Ananas bracteatus clone 47023c microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006651722.2	0.0	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24
Refseq	XP_025794600.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	Q10EL1	0.0	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A199USE7	0.0	A0A199USE7_ANACO; Zinc finger CCCH domain-containing protein 24
STRING	OB03G37760.1	0.0	(Oryza brachyantha)
STRING	OBART03G30710.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-109	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Aco012259.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]