PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012309.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 341aa    MW: 35899.9 Da    PI: 6.6293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012309.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS30.54.4e-10155215363
         GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselyka 63 
                  elLl++A+ ++sgd + a+ +Larl+ + a+p g p+qR+a+yf+eAL + l++  ++ ++a
  Aco012309.1 155 ELLLSAADSLESGDPHSADLALARLNPHlAAPLGPPLQRAAFYFKEALLSLLHG-APHAAAA 215
                  79***********************9777*********************9998.5555544 PP
2GRAS51.22.3e-16227301104180
         GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                  +a+ ++  vH++Dfd++ G+QW ++ ++ a+R+  +pp +R+T+v++   +++ e    +e+L++fA+ lg++++ ++
  Aco012309.1 227 DAAGSAASVHVVDFDLGLGGQWSSFAHEVAARRaPQPPAIRVTAVVA---EETPEAALAAENLSDFARGLGLRLSVDL 301
                  56667799**********************98845678*********...468899999*************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.002127340IPR005202Transcription factor GRAS
PfamPF035141.5E-7155215IPR005202Transcription factor GRAS
PfamPF035148.0E-14227301IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKSTKLVADS HTFPTKLGAD SSSPPHHHHH HYHHHHQTTS PFPSTTFYYE PTSVLDPHLT  60
SSPSSAAAAA GDLHRLAAPP PPQQQQQQQQ QHPDSNSAAA AAAEWDPLSS WILSERDLAL  120
DLPQFQSQFT SFDPSPFSDP FETLTTPPFD RPHLELLLSA ADSLESGDPH SADLALARLN  180
PHLAAPLGPP LQRAAFYFKE ALLSLLHGAP HAAAAPPPMI SAAEAFDAAG SAASVHVVDF  240
DLGLGGQWSS FAHEVAARRA PQPPAIRVTA VVAEETPEAA LAAENLSDFA RGLGLRLSVD  300
LVRLGGAVPP PRGASRGGAR GRRGLRRRSG VAEARGGGGC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086201.11e-172protein SCARECROW-like
TrEMBLA0A199V2Y71e-156A0A199V2Y7_ANACO; Scarecrow-like protein 15
STRINGXP_008778087.17e-53(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711