PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012353.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 187aa MW: 19797.9 Da PI: 8.4154

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012353.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84	2.2e-26	3	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C ++C l+ ++ +++q +++ +v+k+FG++ ++ +l+a+p ++r+++++sl++eA+ r+ Pv Gavg++++++++l+q+++ Aco012353.1 3 SCNGCRVLRKGCGEGCLLRVCLegwvdgAEAQGHATLFVAKFFGRAGLSAFLSAVPLSHRPALFRSLLFEACGRTISPVGGAVGLLWAGNWHLCQAAV 100 6**********************99888999*************************************************************99 PP DUF260 93 elallke 99 +++l++e Aco012353.1 101 HAVLRGE 107 9887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.162	2	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-22	3	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MMSCNGCRVL RKGCGEGCLL RVCLEGWVDG AEAQGHATLF VAKFFGRAGL SAFLSAVPLS 60 HRPALFRSLL FEACGRTISP VGGAVGLLWA GNWHLCQAAV HAVLRGESIR PLPEDLAAAV 120 GIEETSSSRQ CDLDLYLTPM LPAPPAKEEK RRQRKRLRTP SVNSEGSVTV SENGGGGGPQ 180 LLNLFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	EKRRQRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086117.1	1e-133	LOB domain-containing protein 37-like
Swissprot	Q9FN11	5e-58	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A199VTA7	1e-128	A0A199VTA7_ANACO; LOB domain-containing protein 37
STRING	GSMUA_Achr3P18860_001	4e-72	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	9e-60	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Aco012353.1

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]