PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012356.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 413aa    MW: 44268.2 Da    PI: 5.3353
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012356.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS233.21.2e-71723692285
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA+a++ +d++laq++L+ l+++a pdgd++qRl++ f++AL ar +   ++ +k+l++ +++ ++++ ++  l  f++++P+++f++ + N
  Aco012356.1  72 EQLLVHCANAIDGNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVARASA--TGSCKILASPPAPARHHQFSALDLANFVDLTPWHRFGYTASN 167
                  79**************************************************99..77777777777766566666666666**************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......vakrl 186
                   aIl+aveg++ vHi+D++ ++++Q p+L++aLasRpegpp lR+T+ ++ +++       ++ e+g+rL +fA++ ++p+ef+v+        +  +
  Aco012356.1 168 AAILDAVEGSSVVHIVDLGTTHCMQIPTLIDALASRPEGPPVLRLTVPSATANSpppmLDISYDELGSRLVNFARSRNIPMEFQVVhsspsdgFSALI 265
                  ***********************************************99988888877778899*********************9555444444445 PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                  ++l++++L  + gEal+Vn+++ lh+++de++          r+ +Lk+v+sl+P +v+v++++ad ++++ + r+ +a++y +  +d++++ lp+ s
  Aco012356.1 266 DQLRVQQLVSEGGEALVVNCQMLLHYIPDETAGAIAtppvsLRSMFLKAVRSLEPALVTVADEDADFTATDVVSRLRSAFNYLWIPYDAVDTFLPKGS 363
                  555666665555****************9998765545566899****************************************************** PP

         GRAS 280 eerikv 285
                  e+r+  
  Aco012356.1 364 EQRKEA 369
                  999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.29745412IPR005202Transcription factor GRAS
PfamPF035144.0E-6972369IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MMQFTQSAPP PAPLLHHNGG GHGLGLDLAE PDQPLLYSQR CAARPPWTGR SAVAFPTSSR  60
ALGSFNTAGC MEQLLVHCAN AIDGNDATLA QQILWVLNNI APPDGDSNQR LTSAFLRALV  120
ARASATGSCK ILASPPAPAR HHQFSALDLA NFVDLTPWHR FGYTASNAAI LDAVEGSSVV  180
HIVDLGTTHC MQIPTLIDAL ASRPEGPPVL RLTVPSATAN SPPPMLDISY DELGSRLVNF  240
ARSRNIPMEF QVVHSSPSDG FSALIDQLRV QQLVSEGGEA LVVNCQMLLH YIPDETAGAI  300
ATPPVSLRSM FLKAVRSLEP ALVTVADEDA DFTATDVVSR LRSAFNYLWI PYDAVDTFLP  360
KGSEQRKEAA AEVKGMLDEH AAGWGMKREE DGDLVLTWKG HNVVFATAWV PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-385141267475Protein SHORT-ROOT
5b3h_B1e-385141213421Protein SHORT-ROOT
5b3h_E1e-385141213421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102193.10.0scarecrow-like protein 32
SwissprotQ9SN221e-136SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A199VGJ30.0A0A199VGJ3_ANACO; Scarecrow-like protein 32
STRINGXP_008775518.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-139GRAS family protein