PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012397.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 352aa    MW: 39002.2 Da    PI: 8.2601
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012397.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057200222123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C  C+ksF++   L  H  +H
  Aco012397.1 200 YNCATCDKSFPSYQALGGHRASH 222
                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-5228No hitNo description
PROSITE profilePS5015710.367527IPR007087Zinc finger, C2H2
SMARTSM003550.15527IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-5528IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-6196230No hitNo description
PROSITE profilePS501579.951200227IPR007087Zinc finger, C2H2
SMARTSM003550.21200222IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-12200224IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
PfamPF139122.2E-8272295IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307273300IPR007087Zinc finger, C2H2
SMARTSM003550.11273295IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
METKHSCKAC GKSFPCGRSL GGHMRSHLSL IAPPSEAAED NARIGRSSIG SASRSYVLRE  60
NPKRTWRVAS RDTDLDLKSE RVFAPRKQFS EHSKCHSEEE HEESSSWKEQ EDVALCLMML  120
SRDVDDKGVD KESKEDPGSL TNDTERSKRR SKLCFLPNGK ANSGASDEGP AENSRVSEIN  180
KENGGSGDFG SSTKKKKRPY NCATCDKSFP SYQALGGHRA SHKRIRGFVC SSKAQENSAE  240
TNASFESTTL KETLNKDIGA DHCCAETKSV NRHQCPFCFK IFPSGQALGG HKRSHLVSRS  300
DFGEVSGINQ NFEIGQRKLK QRNLIDLNLP APVDEDSSNT NENYEFKSWW I*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085376.10.0zinc finger protein ZAT1-like
TrEMBLA0A199V6R60.0A0A199V6R6_ANACO; Zinc finger protein ZAT9
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-25C2H2-like zinc finger protein