PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012458.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YB
Protein Properties Length: 212aa    MW: 22311.9 Da    PI: 6.9352
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012458.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.52.6e-5526118193
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                  vreqdrflPian+srimkk +Pan+ki+k+aketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy+eplk+yl+kyre 
  Aco012458.1  26 VREQDRFLPIANLSRIMKKGIPANGKIAKEAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREG 118
                  69*****************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-5123123IPR009072Histone-fold
SuperFamilySSF471132.79E-3729119IPR009072Histone-fold
PfamPF008081.9E-263296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-226078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-227997No hitNo description
PRINTSPR006151.4E-2298116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MADAPASPGG GGSHESGGDG SPRSNVREQD RFLPIANLSR IMKKGIPANG KIAKEAKETV  60
QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIEPLKL YLQKYREGDS  120
KLGAKGGDGS IKKDGGVLLL GGAQQGSSTQ GSTRTLQSRH ELHATSVTGD GSLFAEGAEL  180
LGHSYQARPD PTSMAFASGS PLYSCSRNLV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-4827117393NF-YB
4awl_B5e-4827117494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4827117494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102064.11e-106nuclear transcription factor Y subunit B-like isoform X2
SwissprotQ8VYK43e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A199UVY21e-137A0A199UVY2_ANACO; Nuclear transcription factor Y subunit B-8 (Fragment)
STRINGXP_009620316.12e-78(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.13e-61nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]