PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012465.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

S1Fa-like

Protein Properties

Length: 83aa MW: 8872.56 Da PI: 10.659

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012465.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	134.7	2.3e-42	16	82	5	70
S1FA 5 kvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++e kGlnPGlivllvvggl+l+flvgny+ly yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe Aco012465.1 16 IEEGkKGLNPGLIVLLVVGGLVLLFLVGNYALYAYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 82 445459************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.5E-40	18	82	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MADQFSFTDG GGNVIIEEGK KGLNPGLIVL LVVGGLVLLF LVGNYALYAY AQKTLPPRKK 60 KPVSKKKMKR ERLKQGVSAP GE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020102276.1	7e-52	DNA-binding protein S1FA-like isoform X1
Refseq	XP_020102277.1	7e-52	DNA-binding protein S1FA-like isoform X1
Refseq	XP_020102278.1	7e-52	DNA-binding protein S1FA-like isoform X1
Swissprot	Q7XLX6	1e-23	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A199UT37	8e-51	A0A199UT37_ANACO; DNA-binding protein S1FA2
STRING	Gorai.002G249300.1	6e-25	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Link Out ? help Back to Top
Phytozome	Aco012465.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]