PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012482.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 170aa    MW: 18859.3 Da    PI: 6.5143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012482.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-104990955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  r RR+ri ++f +Lr+l+P       +Kl+ +++L +A++Y+k L+
  Aco012482.1 49 ARARRHRISDRFRTLRSLVPGG-----TKLDTVSMLDEAIHYVKFLE 90
                 699*****************87.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7074089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1445103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-124698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-124693No hitNo description
SMARTSM003533.0E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-85090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDTFGDHRNN TNLNQSISEK RRGVAGGGSR VGSSRTRVKL STDPQSVAAR ARRHRISDRF  60
RTLRSLVPGG TKLDTVSMLD EAIHYVKFLE AQLWLLRQVE LSLPADFAAA QMSGDFDNNH  120
EFEMTQQLFC DSVQLQPPPP SPSPSPSLPP LPTCFIQGEE EMILDLMYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102047.11e-114pyruvate decarboxylase 1-like
TrEMBLA0A199VCJ71e-122A0A199VCJ7_ANACO; Transcription factor LAX PANICLE
STRINGAquca_045_00179.15e-31(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-26APRATAXIN-like