PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012593.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 690aa    MW: 72274.2 Da    PI: 6.3929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012593.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.52.1e-1233256807374
         GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIl 103
                  +cAe v++++l +a++lL ++sela+p g++ qR+aayf eA++arl++s+ +ly+ lp+s+ +  + + + +aa+++f+ +sP++kfsh+taNqaI 
  Aco012593.1 325 RCAESVAADNLDEANRLLLEISELATPFGSSAQRVAAYFSEAMSARLVSSCLGLYAPLPASSPAALRvHHRLAAAFQVFNGISPFVKFSHFTANQAIQ 422
                  7*********************************************************888877666466777889********************** PP

         GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                  ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+pfef++ va+++ +l++++L v+++Ea
  Aco012593.1 423 EAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SLDALEATGKRLSDFADTLGLPFEFHP-VADKVGNLDPDRLGVSRREA 515
                  **********************************************....9**************************.7******************* PP

         GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                  laV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++  ++sFl+rf+ea++yysalfdsl a+++++s er++vE++ll+rei+nv+a
  Aco012593.1 516 LAVHWLH--HSLYDVTGSDTN----TLWLLQRLAPKVVTMVEQDLSP-GGSFLARFVEAIHYYSALFDSLGASYGEDSPERHVVEQQLLSREIRNVLA 606
                  ******9..999999999999....********************98.789*********************************************** PP

         GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    g +r  + + +++Wre+l ++GF++v+l  +aa+qa lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Aco012593.1 607 VGGPARSGDVK-FGNWREKLAQSGFRSVSLAGNAAAQATLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 680
                  *****988887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.762293660IPR005202Transcription factor GRAS
PfamPF035147.4E-121325680IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MGSSSLLLLP PTTTTTTTTN TTSSSHDSHF SHYSEEEKEL LYLLYLQQQQ QQQQQQQQQQ  60
QVGEVIMVRK RPASELDLQH ESSSSSYHNP RLPRRGGGGG AAAAGGGASS STAAAQGPFA  120
ESAAAGHPSS LLYSASSGGG ALDAPILVQH GGNPTQFLPS LPPPAPAVCG FSGLPLFPAE  180
LERGGGGGAA AANEGVAGRG GADEGAASAW VDGIIRDLLS SAAPAVSIPQ LIHNVREVIH  240
PCNPALAAVL EHRLRSLASS DPLPPPPPPP PPLPSLPSDA PSLTSSPPRA RPSPAPAPTG  300
PASSQVATKP TTAAAAAAQL AGGARCAESV AADNLDEANR LLLEISELAT PFGSSAQRVA  360
AYFSEAMSAR LVSSCLGLYA PLPASSPAAL RVHHRLAAAF QVFNGISPFV KFSHFTANQA  420
IQEAFDREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASL DALEATGKRL  480
SDFADTLGLP FEFHPVADKV GNLDPDRLGV SRREALAVHW LHHSLYDVTG SDTNTLWLLQ  540
RLAPKVVTMV EQDLSPGGSF LARFVEAIHY YSALFDSLGA SYGEDSPERH VVEQQLLSRE  600
IRNVLAVGGP ARSGDVKFGN WREKLAQSGF RSVSLAGNAA AQATLLLGMF PSDGYTLVEE  660
NGALKLGWKD LCLLTASAWR PIQTANPPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.032568124379Protein SCARECROW
5b3h_D0.032568124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020695561.20.0protein SCARECROW 1
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A2I0VDU00.0A0A2I0VDU0_9ASPA; Protein SCARECROW
STRINGMLOC_64716.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein