PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012598.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 292aa    MW: 33278.3 Da    PI: 7.5433
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012598.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.5e-52161431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yL++k++ ++l++  +i+evd+yk++Pw+Lp+k+  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v+ k ++
  Aco012598.1  16 LPPGFRFHPTDEELVVHYLCRKAAYERLPV-PIIAEVDLYKYDPWELPEKALFGQREWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVVPKgTH 112
                  79****************************.88***************8878899**************************************98667 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +  g+kk Lvfy+g+ap+g ktdW+mheyrl
  Aco012598.1 113 RPLGIKKALVFYSGKAPRGAKTDWIMHEYRL 143
                  77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6312169IPR003441NAC domain
PROSITE profilePS5100560.68316169IPR003441NAC domain
PfamPF023651.0E-2617143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLARRTRDA EAELNLPPGF RFHPTDEELV VHYLCRKAAY ERLPVPIIAE VDLYKYDPWE  60
LPEKALFGQR EWYFFTPRDR KYPNGSRPNR AAGRGYWKAT GADKPVVPKG THRPLGIKKA  120
LVFYSGKAPR GAKTDWIMHE YRLADTSRSP NKKGSLRLDD WVLCRLYNKK NSWEKMQSQK  180
EEASMMTTDS TDDSGSNSFR TPESDIDNDV FDKAAARPEA YPNHQSTEVC QIKEDSEWFM  240
DLNLDDLQSA YTGFGPATPT PTFDMSNPSF YFPGLSSPKP NSNQTMNLPP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-9911751174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6617201e-102KM661720.1 Ananas bracteatus clone 44508 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102207.10.0NAC domain-containing protein 68-like
SwissprotQ52QH41e-116NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A199V2500.0A0A199V250_ANACO; NAC domain-containing protein 68
STRINGXP_008792530.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.17e-90NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]