PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012613.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 355aa MW: 39370.2 Da PI: 7.1516

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012613.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.8e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF+eav+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl Aco012613.1 44 KPRLKWTPELHQRFIEAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.898	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.06E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-24	145	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MYHQHQGHSD LFSPRAAFPQ DRHLFLQGGN VTGESGLVLS TDAKPRLKWT PELHQRFIEA 60 VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANIAT TKNVIGCVAA 120 ADRTPGQSGL IVSNTSATCE AEKTMQISEA LQMQIEVQRQ LHEQLEVQRH LQLRIEAQGK 180 YLQAVLEKAQ ETLGKQNLTS SGLEAAKIKL AEQVPEVSNE FLNNGFPNSE EITNISILGA 240 QAIQLADCSR RDLVYQTVKF ERDTNILPVH LKGQTENGGN KNNSQSKQKE RENEKFYLEQ 300 QLNYKRPAVQ HMAGNGSNDF GLACFGAQLD LNAHDNNDSD SSNKEFDLNG LSWS*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MYHQHQGHSD LFSPRAAFPQ DRHLFLQGGN VTGESGLVLS TDAKPRLKWT PELHQRFIEA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANIAT TKNVIGCVAA  120
ADRTPGQSGL IVSNTSATCE AEKTMQISEA LQMQIEVQRQ LHEQLEVQRH LQLRIEAQGK  180
YLQAVLEKAQ ETLGKQNLTS SGLEAAKIKL AEQVPEVSNE FLNNGFPNSE EITNISILGA  240
QAIQLADCSR RDLVYQTVKF ERDTNILPVH LKGQTENGGN KNNSQSKQKE RENEKFYLEQ  300
QLNYKRPAVQ HMAGNGSNDF GLACFGAQLD LNAHDNNDSD SSNKEFDLNG LSWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020101400.1	0.0	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-100	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A199W8Y1	0.0	A0A199W8Y1_ANACO; Myb family transcription factor APL (Fragment)
STRING	GSMUA_Achr5P07670_001	1e-139	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-102	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco012613.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]