PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012738.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 197aa MW: 21649.8 Da PI: 7.9453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012738.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	18	41	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 kC C + ++ ++L+ H+r+ H Aco012738.1 18 KCAACFRQYNKMEHLVEHMRVsfH 41 6999****************8666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.762	17	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	19	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MLHTNCKASA STIECLNKCA ACFRQYNKME HLVEHMRVSF HSSHEPKCGV CQKHCRSFES 60 LREHLIGPLP KVDCARIFGI RGCNLCLNIF DSSSALRAHR TACQYSRTSV NSGFISRMSR 120 MSLQSSTDNY GRTQGLQVVA LACKMVGGGS DGSLDLCARV CLVGEDESII NLNGADYQFE 180 VPIIQIDLIG QGFQSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089248.1	1e-110	uncharacterized protein LOC109710870
TrEMBL	A0A199UY34	8e-95	A0A199UY34_ANACO; RNA exonuclease 4
STRING	GSMUA_Achr2P14440_001	1e-82	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2146	5	5

Link Out ? help Back to Top
Phytozome	Aco012738.1