PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012769.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 78aa    MW: 8754.55 Da    PI: 4.8488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012769.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11350347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+e  +l+ da  ++  g   +W +Iar +g g+t++++  ++ ++
      Aco012769.1  3 SWTKEQNKLFEDALDRYDEGtpnRWQKIARAVGGGKTAEEVERHYEML 50
                     7********************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-7153IPR001005SANT/Myb domain
PROSITE profilePS5129312.711155IPR017884SANT domain
SuperFamilySSF466891.0E-12258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-6257IPR009057Homeodomain-like
CDDcd001671.77E-6351No hitNo description
PfamPF002491.9E-8350IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MSSWTKEQNK LFEDALDRYD EGTPNRWQKI ARAVGGGKTA EEVERHYEML IKDLKSIESE  60
NDNSSSNAKG DNTAYKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-153591065RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582408.13e-24PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN02e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A199UH722e-41A0A199UH72_ANACO; Protein RADIALIS-like 3
STRINGGSMUA_Achr2P22930_0012e-23(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-20RAD-like 1