PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012823.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 388aa    MW: 41274.2 Da    PI: 7.7553
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012823.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71e-40129205177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cq+egC adl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q
  Aco012823.1 129 RCQAEGCGADLTHAKHYHRRHKVCEFHSKASIVITAGLSQRFCQQCSRFHVLAEFDQGKRSCRKRLADHNRRRRKSQ 205
                  6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-31124191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-38128205IPR004333Transcription factor, SBP-box
PfamPF031103.2E-30130203IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MMMDYEWGNP ASAAAAMLLF GEESGADTGQ DQRAVFDHYG VHGLNTIGIS DYFPQPPQPL  60
TAAALFSPSS SSSSSCHPRY GLALPPAPTR IGLNLGVRTY FSSASPEDEL AAAAGNPPRA  120
CRRRTRTARC QAEGCGADLT HAKHYHRRHK VCEFHSKASI VITAGLSQRF CQQCSRFHVL  180
AEFDQGKRSC RKRLADHNRR RRKSQDLSTA PISSQANNNA PNIANTNSSG SSGITTSHSP  240
AKPETALFNN NNNNNNNSST NNNNDINNDN NNNDDDDDDG GQINNRNSAF SAFIGCNPEG  300
DSSASHVSST LAPPVAQVAL GLGRSSGIVT PVANAIMGLS ATSSTGTTSP TSMSFLPHLG  360
EQRFSSWVAP TRAAEDDSCI RGIYQSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301302031184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085290.10.0squamosa promoter-binding-like protein 8
SwissprotQ8GXL32e-49SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A199V9970.0A0A199V997_ANACO; Squamosa promoter-binding-like protein 8
STRINGXP_008802805.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1946357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-47squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]