PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012909.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 580aa    MW: 65476.1 Da    PI: 6.8797
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012909.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28336389155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k +++WtpeLH+rFv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR+
  Aco012909.1 336 KMKVDWTPELHKRFVQAVEQL-GIDQAIPSKILELMKVEGLTRHNVASHLQKYRM 389
                  5689*****************.********************************8 PP
2Response_reg25.28.1e-10261267109
                   SHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEES CS
  Response_reg   7 eplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsK 100
                   +p+     +  lek +y +v + +d ++ale +  k++ +++ l+ +   +    +e+l+       +lpiiv++     +++ +++  Ga +fl K
   Aco012909.1  26 DPNSVAETKIKLEKMDY-SVFSYSDIQDALEAIlrKAESFHVALVEVTVDNsERTFEFLEMA----RDLPIIVISNDCCLSTTMQCIAHGAAEFLQK 117
                   34444456667899***.***************555555*******9988844455555443....3699*************************** PP

                   S--HHHHHH CS
  Response_reg 101 pfdpeelvk 109
                   p ++++l++
   Aco012909.1 118 PLSEDKLRN 126
                   ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.82E-1516137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-1417168No hitNo description
SMARTSM004480.004118128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.5419132IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.24E-822131No hitNo description
PfamPF000723.9E-624127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129415.25333392IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-28334392IPR009057Homeodomain-like
SuperFamilySSF466891.34E-18334392IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25336390IPR006447Myb domain, plants
PfamPF002492.3E-8339388IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MIPSTIDMVL WKDFPKGLRV LLLCEDPNSV AETKIKLEKM DYSVFSYSDI QDALEAILRK  60
AESFHVALVE VTVDNSERTF EFLEMARDLP IIVISNDCCL STTMQCIAHG AAEFLQKPLS  120
EDKLRNIWQH VVHKAFNASE SVTPKSLKPI KETVVSMLQL DTKDSEEKIK SQSKAEDAEK  180
NHVDNDEYKT TTDRYPAPST PKLKQVERMV NDENSQENKC LTDGMEDPKG FLEVRKFASS  240
ESKSVDDACT NSIGVLNTNR DALTSAKQRE AACEEEVNSA DSSRPDECSA VKASSPTSSN  300
VNIECNLQSS FDDKKKNKSV FSSDSLTRGS KGNKKKMKVD WTPELHKRFV QAVEQLGIDQ  360
AIPSKILELM KVEGLTRHNV ASHLQKYRMN RRHILLKEDD RKWQTKGDPN SWGYIQRPLM  420
AYPPLHPTYS VPPGHLYAPW VHPSYQPHGA QMWGHPGFHA WHPPLEMWHW KTYPGVQADA  480
WGCPVIPQYG YSPNSHQRLP MNYNLDTISD RNRETKDANG FHLAEEVADE VVKEAMSKPW  540
LPLPLGLKPP STDAVLAELH RQGIRTVPPC ARSARAPHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-17341389654Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084405.10.0two-component response regulator-like APRR2 isoform X2
TrEMBLA0A199VJQ60.0A0A199VJQ6_ANACO; Two-component response regulator-like APRR2
STRINGXP_008784680.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-108ARR-B family protein