PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012913.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 308aa    MW: 33162.1 Da    PI: 9.8205
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012913.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.2e-29225279155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt+eLHe+Fv+av+ LGG+ kAtPk il lmk +gLt+ h+kSHLQkYR+
  Aco012913.1 225 KQRIRWTQELHEEFVKAVDGLGGPIKATPKGILGLMKSEGLTVFHIKSHLQKYRM 279
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-14223279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-26224280IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-23225280IPR006447Myb domain, plants
PfamPF002492.9E-6229278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046786Biological Processviral replication complex formation and maintenance
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MATSGGGGGV GGGGGGGFRE GSAKAAVADQ MMQAIQSTSN LLHLMQESSP AQAHLIKLPK  60
NLLAKASVTK NTGQVLEHLP RIISSLDAYT ESSLQRTQDF SGIASNDNRQ SHGELILDQS  120
HNQSFLSELY HGFQPTPEDQ TIYSKMSNLN YGSSIDSQGS ACNSFVTTSQ ARNNKRKGYD  180
VIGKNSDLSI QQLRRVDLDA WIYGSGAGKV HTNNSTQFRG AVTNKQRIRW TQELHEEFVK  240
AVDGLGGPIK ATPKGILGLM KSEGLTVFHI KSHLQKYRMA KCTPDLLEGN RARRTSNDGS  300
PESSLRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-21225281157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-21225281157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-21225281157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-21225281157Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084275.11e-152myb family transcription factor PHL4-like isoform X6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.23e-26G2-like family protein