PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012957.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 138aa    MW: 15711 Da    PI: 4.8006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012957.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.9e-1526113497
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  + ++s   +  rlv+pk+f  e    +++++ ltl + ++++Wev+++ +++ +r  +++GWk+F+ +n+L+ gD +vF+l+++++ ++ v+v+
  Aco012957.1  26 IISKSQIQQPFRLVVPKEFR-EL--LPPSPVWLTL-SCKNKTWEVRYCGDRYLKR--FETGWKRFAIENNLEIGDGCVFELMDNENLNFGVRVL 113
                  556667777799*******7.33..3567777774.5699*******88888888..89**********************9988887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-1918114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-1919111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-1821114No hitNo description
SMARTSM010199.0E-923116IPR003340B3 DNA binding domain
PROSITE profilePS5086312.87223116IPR003340B3 DNA binding domain
PfamPF023621.1E-1227112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSAEPAECKA QDEVVPLSGN PYFTIIISKS QIQQPFRLVV PKEFRELLPP SPVWLTLSCK  60
NKTWEVRYCG DRYLKRFETG WKRFAIENNL EIGDGCVFEL MDNENLNFGV RVLKGEIPSL  120
VRNIEDGRSS DSPIMID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085306.11e-97B3 domain-containing protein Os04g0386900-like
RefseqXP_020085307.11e-97B3 domain-containing protein Os04g0386900-like
TrEMBLA0A199V0542e-96A0A199V054_ANACO; B3 domain-containing protein
STRINGXP_008776698.12e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09related to vernalization1 1