PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012965.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HB-other
Protein Properties Length: 373aa    MW: 39355.9 Da    PI: 6.5041
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012965.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.9e-21126181156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Aco012965.1 126 KKRYHRHTAHQIQEMETLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 181
                  688999***********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-20110184IPR009057Homeodomain-like
SuperFamilySSF466898.13E-20120185IPR009057Homeodomain-like
PROSITE profilePS5007117.248123183IPR001356Homeobox domain
SMARTSM003893.8E-19124187IPR001356Homeobox domain
CDDcd000868.04E-20126184No hitNo description
PfamPF000468.5E-19126181IPR001356Homeobox domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MYGDCQVMSS MVGGGGGGNV VSPDSLFSSP IRNPSLGFMT NMPFHAFSAA LVPKEEGVMV  60
MGRGGAAKEE EVESGGSGSG HLDGLGSGSG HVDGLSCGEE HDNEHQKLQQ QHQQQQQQTP  120
SGSAKKKRYH RHTAHQIQEM ETLFKECPHP DDKQRLKLSQ ELGLKPRQVK FWFQNRRTQM  180
KAQQDRADNV VLRAENDSLK NENFRXPILI YHACMHGHVE CMQASSNSSQ NVELLLQESN  240
THPSGGSLVV YATVDVGAVQ VAMSGEDPSY IPLLPMGFVL SPSPPPPSRT SSATPEGDGS  300
GASAATAAAV APGCLLTISM QVLASAVPSA KLNLSSVTAV NHHLCNAVRQ ISAALGGPPQ  360
PEPAGTAAPP DP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084986.10.0homeobox-leucine zipper protein ROC3-like
SwissprotA2ZAI75e-67ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2H3YTV63e-86A0A2H3YTV6_PHODC; homeobox-leucine zipper protein ROC3-like
STRINGXP_008803566.16e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.14e-40homeobox-7