PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013011.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 311aa    MW: 35285.5 Da    PI: 5.4806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013011.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12153198247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ l++ +   +G g W+tIa+ +  +Rt+ q+ s+ qky
      Aco013011.1 153 KPWTEEEHRLFLIGLSVHGRGEWRTIAKNFVITRTPTQVASHAQKY 198
                      58*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.948155IPR017877Myb-like domain
SMARTSM007171.6557IPR001005SANT/Myb domain
CDDcd001678.36E-4851No hitNo description
PROSITE profilePS5129419.926147203IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-12151203IPR009057Homeodomain-like
SuperFamilySSF466893.8E-14151200IPR009057Homeodomain-like
SMARTSM007173.0E-10151201IPR001005SANT/Myb domain
PfamPF002499.9E-11153198IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-13153202IPR006447Myb domain, plants
CDDcd001678.71E-8154198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNSLDNEEWT PSERKRFDEA LSEIDFHEPN WLEELAQRFP TKTMRQLRDQ YVDHIVDMQC  60
TYIERSMPLE YVNPVDMLEN DNFGLPVTEE GEESQSFEAA LMEATTKMSD AKSLSPQSIN  120
KLVSEHLGIV GVDAEEKEKV GGQFGARTST KGKPWTEEEH RLFLIGLSVH GRGEWRTIAK  180
NFVITRTPTQ VASHAQKYYN RKLVLKEKRR HSIHDIRNME DNVEGALEKS LCERVRPTKT  240
YSVGTKTNQK KPTSSATTTQ GIGSLSLSPI RATTLSEQLV RSGNFLSDDE IVRSPFDTYI  300
DQGSSSIWPL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080020.10.0transcription factor DIVARICATA-like
TrEMBLA0A199UDT10.0A0A199UDT1_ANACO; Transcription factor DIVARICATA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3662422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.12e-30MYB family protein