PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013026.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WOX

Protein Properties

Length: 285aa MW: 31325.1 Da PI: 5.702

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013026.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.1e-20	120	180	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+ +++e++ +l +++e++V++WFqNrRa+ k+ Aco013026.1 120 RQRWTPTPMQLQILETIFDQgNGTPSKLKIKEITLELsqhgQISETNVYNWFQNRRARSKR 180 89***************99************************************97 PP
2	Wus_type_Homeobox	100.3	1.4e-32	119	182	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k +i++it eL+++G+i+++NV++WFQNr+aR+++kq Aco013026.1 119 PRQRWTPTPMQLQILETIFDQGNGTPSKLKIKEITLELSQHGQISETNVYNWFQNRRARSKRKQ 182 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-17	115	186	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.382	116	181	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-19	118	186	IPR009057	Homeodomain-like
SMART	SM00389	6.2E-14	118	185	IPR001356	Homeobox domain
CDD	cd00086	3.14E-13	119	182	No hit	No description
Pfam	PF00046	3.3E-18	120	180	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEWEKGGPRR SKAATTTTTT MMVEEEEAEE RRRRGGGGGG GGGGVEAEGI VEGGLYVKVM 60 TDEQMEVLRK QISIYATICE QLVEMHKAIT AQQDSLAGMR LGSLYCDPLM TPGGHKITPR 120 QRWTPTPMQL QILETIFDQG NGTPSKLKIK EITLELSQHG QISETNVYNW FQNRRARSKR 180 KQNAASANNA ESEFEVDDES PSEKKPKSEK PHDVSPAMAG EISIHSSEMN SQMHAIDPVP 240 PCRNQGFYAS NDSSRSSGSS GQMPFYENIL ASPNAVVQLN YPFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	181	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661285	1e-175	KM661285.1 Ananas bracteatus clone 42949 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020079910.1	0.0	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-97	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A199UDQ0	0.0	A0A199UDQ0_ANACO; WUSCHEL-related homeobox 8
STRING	XP_008812362.1	1e-119	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-69	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Aco013026.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]