PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013105.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 256aa    MW: 28708.8 Da    PI: 8.1665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013105.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+  ++++G g+W++ ++  g+ R++k+c++rw +yl
      Aco013105.1 14 KGAWTKEEDERLIAHIREHGEGCWRALPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.13.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++
      Aco013105.1  67 RGNFSLDEDDLIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.834961IPR017930Myb domain
SMARTSM007175.1E-141363IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2913108IPR009057Homeodomain-like
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001673.41E-111661No hitNo description
PROSITE profilePS5129427.31862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2765116IPR009057Homeodomain-like
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.86E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAHIR EHGEGCWRAL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SLDEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLSRG  120
IDPVTHRPLS ERGSSPSNAA ATAFETAKQE GTPDDDHAAV DAAESMSLSQ QQQQQQQQRP  180
KCPDLNLELC ISPPLQEEEE AALVKPPVVK REGGGLFCFK CCGLGVKKEM MECNCNNSFL  240
TLGMQLLDYR SLQMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020115068.10.0myb-related protein Zm38-like
SwissprotP200251e-104MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A199UKP61e-168A0A199UKP6_ANACO; Myb-related protein Zm38
STRINGPavir.J16675.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-92myb domain protein 7
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]