PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013131.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family DBB
Protein Properties Length: 1261aa    MW: 136255 Da    PI: 7.9012
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013131.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.7e-05766805538
     zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                   C+ ++   ++ fC  ++  lC+ C    H+       H+
  Aco013131.1 766 QCDVCGGASATVFCCADEAALCDGCDRRVHHAnklagkHR 805
                  7**************************9964446777776 PP
2zf-B_box21.35.6e-07825865337
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                   + C+ ++e +   fC++++  lC+dC + +H+       H
  Aco013131.1 825 DPLCDVCKERRGFVFCQEDRAILCRDCDDPIHSAndltmrH 865
                  579*******9*********************655666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059227.1E-1922101IPR010259Peptidase S8 propeptide/proteinase inhibitor I9
Gene3DG3DSA:3.40.50.2001.1E-7576147IPR000209Peptidase S8/S53 domain
CDDcd048522.84E-14698576No hitNo description
SuperFamilySSF527433.8E-76100377IPR000209Peptidase S8/S53 domain
PRINTSPR007232.8E-11126145IPR015500Peptidase S8, subtilisin-related
PfamPF000821.1E-46127578IPR000209Peptidase S8/S53 domain
Gene3DG3DSA:3.40.50.2001.1E-75181338IPR000209Peptidase S8/S53 domain
PRINTSPR007232.8E-11206219IPR015500Peptidase S8, subtilisin-related
CDDcd021206.84E-30346473No hitNo description
Gene3DG3DSA:3.40.50.2001.1E-75486615IPR000209Peptidase S8/S53 domain
SuperFamilySSF527433.8E-76489615IPR000209Peptidase S8/S53 domain
PRINTSPR007232.8E-11539555IPR015500Peptidase S8, subtilisin-related
PROSITE patternPS001380540550IPR023828Peptidase S8, subtilisin, Ser-active site
SMARTSM003361.8E-11762809IPR000315B-box-type zinc finger
PROSITE profilePS501199.94762809IPR000315B-box-type zinc finger
CDDcd000218.53E-7765809No hitNo description
PROSITE profilePS501199.712823870IPR000315B-box-type zinc finger
SMARTSM003364.3E-14823870IPR000315B-box-type zinc finger
CDDcd000215.89E-10826870No hitNo description
PROSITE profilePS513756.90610531087IPR002885Pentatricopeptide repeat
PfamPF015351.210631085IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.50910881122IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-610911124IPR002885Pentatricopeptide repeat
PfamPF015350.01910921120IPR002885Pentatricopeptide repeat
PfamPF130414.4E-1411221171IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.64911231157IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-911271158IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.54211581192IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-511601192IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.13111931227IPR002885Pentatricopeptide repeat
PfamPF015350.1411971225IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0005622Cellular Componentintracellular
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1261 aa     Download sequence    Send to blast
MDLMVLRAVR VETRRETHGK SVYIVYMGEK PQMQPHLVHE LHHGILTSVL GSEEEAKTSI  60
LYSYKHGFSG FAAVLSESQA ARLVDWPGVV RVVPNRILEL HTTRSWDFLH LSPEPSNGLL  120
SLSRFGERSI IGVLDTGIWP ESESFKDDGM GEVPPRWRGK CVEGEKFRAS NCNRKIIGAR  180
WYIKGYEAEN GKLNTSEVFE FLSPRDAVGH GTHTSSTAAG ALVANASFNG LAQGLARGGA  240
SRARLAIYKV CWATGDCSSA DILAAFDDAI HDGVDVLSVS LGQAPPLPTY VEDVLAIGSF  300
HAVGRGISVV CSAGNSGPYS QTVINTAPWI ITVAASTIDR TFISRITLGN NSTFVGQTLY  360
PGKHHKRNYQ IVNAEDIASS DTEDSDARSC NTGSLNATLA RGKIVLCFQT RGQRVASVAA  420
DTVRKALGVG VIFAQFMTKD IASSYDIPCI QVDLETGSTI LNYIGDTRKP VVKFSSAKTI  480
LGKLIAPEVA YFSSRGPSSL SPSVLKPDIA APGVNILAAW PPASMLSPTS RPVNFRIDSG  540
TSMSCPHISA VVALLKSIHP DWSPAAIKSA LVTTANAYDE YGLSIVAEGA PYKQADAFDH  600
GGGHVDPNKA LDPGLVYDTG VSDYIRFLCS MGYNNSAISS MTQHNKACKS SRQSQKDLNL  660
PSISIPELRK TLTVSRTVTN VGPVNAVYRA RVEAPKGVHV NVEPKVLLFN MTAKKLSFKV  720
TFRTKLDVRG RYVFGSLSWE DGVHSVMIPL AVRTVIDDFY TEMKIQCDVC GGASATVFCC  780
ADEAALCDGC DRRVHHANKL AGKHRRFSLI DSPSSSPPPP SGKADPLCDV CKERRGFVFC  840
QEDRAILCRD CDDPIHSAND LTMRHNRFLL TGVRLSTAPI TPSPSSSSPE SNSRSPGDEK  900
VVGNTNSKNS TANAKQDKNL AAEGSSISEY LTKVCPGWHV EDLLIDGDDI VVGGFSKEKE  960
LTAFQRADPD GSSGSLNSAG ATEFPKWAPL VPQLPPLPSE IPAIRNGSAG TVTVSSQWTG  1020
PKELSPSYDI GERVGRERWS VDDAVTVPQI SLAPSSKRTR TPAFCRRGQA RSAASLLDDM  1080
LHRGLPADPL AYASVLNALL RKRRLRDAYR LLCRMRARGC TPDVAHYNTV IVGLCREGRP  1140
TDACKVLDDM PANGCSPNLV SYAAVVQGLC SRGVFDRARR YLDEMVGKGF APHFSLFHLL  1200
VKGFCCVGKA EEACEAMNIM LRLGVKPHVE SWDLVVRVAC DYDEENLEGM LTHVTNMASV  1260
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vta_A1e-1561027561621Cucumisin
3vta_B1e-1561027561621Cucumisin
4yn3_A1e-1561027561621Cucumisin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6678821e-97KM667882.1 Ananas bracteatus clone 53324 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079968.10.0subtilisin-like protease SBT3.6 isoform X1
SwissprotQ8L7I20.0SBT36_ARATH; Subtilisin-like protease SBT3.6
TrEMBLA0A1E5WIP00.0A0A1E5WIP0_9POAL; Subtilisin-like protease SBT3.6
STRINGSi033268m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-48salt tolerance homolog2
Publications ? help Back to Top
  1. Beers EP,Jones AM,Dickerman AW
    The S8 serine, C1A cysteine and A1 aspartic protease families in Arabidopsis.
    Phytochemistry, 2004. 65(1): p. 43-58
    [PMID:14697270]
  2. Rautengarten C, et al.
    Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family.
    PLoS Comput. Biol., 2005. 1(4): p. e40
    [PMID:16193095]
  3. Tripathi LP,Sowdhamini R
    Cross genome comparisons of serine proteases in Arabidopsis and rice.
    BMC Genomics, 2006. 7: p. 200
    [PMID:16895613]