PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013194.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 332aa MW: 36859.2 Da PI: 7.0574

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013194.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.1e-32	166	219	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rF++ave LGG+e+AtPk++le+m+vk+Ltl+hvkSHLQ+YR+ Aco013194.1 166 PRMRWTTSLHARFIHAVELLGGHERATPKSVLEIMDVKDLTLAHVKSHLQMYRT 219 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-15	163	220	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-28	164	220	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	166	219	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-7	167	218	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MELFSPQTEL SLQISPPGTT TPITPTWSRS LDENMDIGYC MRTLDSSSST TNNCTMVPSS 60 TAKAIDSAFD LSLACPSTTK SGDLLDLHYN ESYQHQYHQD LSLLRPLRGT PLYQHHSIAP 120 PFPHQHLPYL YHDYCSSASN FTMQFAANSR SRCLLRIPTK RSVRAPRMRW TTSLHARFIH 180 AVELLGGHER ATPKSVLEIM DVKDLTLAHV KSHLQMYRTV KNTEKPLSSS GQSDGPDLNG 240 STGEVSDDNS LDLNNTKSKS SAQSCLWSNS SSRVGWSNGL PSDHSTNKKM DSLKEMQSKS 300 IEMLSDMNSS CVSEELSPSS LNLEFTLGWR H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	167	221	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114895.1	0.0	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	4e-47	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A199VEB8	1e-131	A0A199VEB8_ANACO; Transcription repressor KAN1
STRING	XP_008802564.1	1e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-47	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco013194.1

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]