PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013196.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 171aa    MW: 18671.9 Da    PI: 6.7746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013196.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-1358149198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f  +lt+s v +  ++ +p kf +       +    t  +  + sW+v++i  + +g   + + Wk+F+ + +L++gD +vF+l+++ + +++v+++r
  Aco013196.1  58 FTAILTKSQVQSPYQMAIPAKFYKFLPAT--C-APAT-LSCGSSSWKVNYI--GDRGFRRFDSDWKHFATDSKLRVGDALVFELVDEAKLKFRVRILR 149
                  778999*****************655433..3.2334.456789******5..555555599***********************9999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1655149IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1655149IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-1756149No hitNo description
PROSITE profilePS5086311.22358151IPR003340B3 DNA binding domain
PfamPF023624.6E-1158149IPR003340B3 DNA binding domain
SMARTSM010198.3E-758151IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSQVPAFSYS NADPCNSDIR RSSHRTAATE NSFSSQESTN HATATEDDSG PLLGKPFFTA  60
ILTKSQVQSP YQMAIPAKFY KFLPATCAPA TLSCGSSSWK VNYIGDRGFR RFDSDWKHFA  120
TDSKLRVGDA LVFELVDEAK LKFRVRILRG DVPEMFAAGG DSSDSPIVID *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114868.11e-124B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2H3YR236e-49A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like
STRINGXP_008802551.11e-49(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-09B3 family protein