PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013206.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LSD

Protein Properties

Length: 139aa MW: 14368.8 Da PI: 7.7401

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013206.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.2	5.5e-13	22	46	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C +V Aco013206.1 22 CSGCRNLLLYPIGATSVCCAVCSAV 46 **********************998 PP
2	zf-LSD1	46.9	4.5e-15	61	85	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Aco013206.1 61 CGGCHTLLMYIRGATSVQCSCCHTV 85 ************************9 PP
3	zf-LSD1	40.8	3.7e-13	99	123	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C++V Aco013206.1 99 CGNCHMLLMYQYGARSVKCAVCNFV 123 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	7.1E-5	19	121	No hit	No description
TIGRFAMs	TIGR01053	6.4E-12	19	49	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.3E-10	22	46	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	5.12E-6	36	105	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	8.0E-15	58	87	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-12	61	85	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-10	96	126	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-12	99	123	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MPVPLAPYPF TPPNGAQNQL VCSGCRNLLL YPIGATSVCC AVCSAVTAVP PPGTEMAQLV 60 CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCHMLLMYQY GARSVKCAVC 120 NFVTSVGASP SAEQKLST*

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114485.1	3e-95	protein LSD1
Swissprot	Q0J7V9	1e-78	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A199UL24	8e-86	A0A199UL24_ANACO; Protein LSD1 (Fragment)
STRING	ERN09291	2e-85	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-61	lsd one like 1

Link Out ? help Back to Top
Phytozome	Aco013206.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]