PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013227.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 245aa    MW: 27711.3 Da    PI: 9.3609
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013227.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.67.7e-3158157198
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+kv tpsdv+k++rlv+pk+fae++     +  +++++lt+ed   g+ We++++y+ +s++yv+t+GW++Fv++++L++gD+v F+   r +++l+
  Aco013227.1  58 FDKVVTPSDVGKLNRLVIPKQFAEKYfplkPSAAAKGVQLTFEDrAAGKPWEFRYSYWSSSQSYVMTRGWSRFVREKRLRTGDTVSFS---RARGRLF 152
                  89*************************99866667999******8899****************************************...5778899 PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  + ++r
  Aco013227.1 153 IDWRR 157
                  99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-3950152IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-2256146No hitNo description
SuperFamilySSF1019362.35E-2856151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.35458159IPR003340B3 DNA binding domain
SMARTSM010196.5E-2558159IPR003340B3 DNA binding domain
PfamPF023622.3E-2758157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDDGCNYSKK EKGEEEQQQQ EQHQDPNDPT QEDHLLTFAS SSSSSSCSSS NLILEHMFDK  60
VVTPSDVGKL NRLVIPKQFA EKYFPLKPSA AAKGVQLTFE DRAAGKPWEF RYSYWSSSQS  120
YVMTRGWSRF VREKRLRTGD TVSFSRARGR LFIDWRRLPR PTTIAAVLRS PTNPGSGGAR  180
VLSFQSVLTP PILRWGAEPI VVDLVHRVVD RPPEAKRFRL FGVDVECVGA GEPAIYDMTQ  240
RFYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-47551605115B3 domain-containing transcription factor NGA1
5os9_B1e-47551605115B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114936.10.0B3 domain-containing protein Os02g0683500-like
TrEMBLA0A2H3ZCE91e-59A0A2H3ZCE9_PHODC; B3 domain-containing protein Os03g0120900-like
STRINGXP_008811395.12e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-49B3 family protein