PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013238.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 345aa    MW: 37676.8 Da    PI: 8.6781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013238.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-125599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Aco013238.1 55 RESWSEVEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 99
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-1549105IPR009057Homeodomain-like
PROSITE profilePS5129413.8150104IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1653102IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-553105IPR009057Homeodomain-like
SMARTSM007172.7E-1054102IPR001005SANT/Myb domain
PfamPF002491.6E-105599IPR001005SANT/Myb domain
CDDcd001676.17E-857100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MLSATPVAAA HGGAYPPPFA PPTPMVAAGA AAALPCSLED PSRKVRKPYT ITKSRESWSE  60
VEHDKFLEAL HLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKNGMSE HVPPPRPKRK  120
AAHPYPQKAP KNAAIITQAV APSPASSLVL EPCYTVSSDS STVVRNSTSN ATLSSCVNGS  180
VQPFSAAQMT KVPSEAIMAN NCCSRTESPT EVWLASETTE KENQVPFLRV MPDFSQVYSF  240
LAGVFDPNTS GHLEKLKEMD PIDVETVLLL MRNLSANLTS PDFEAHRRLL STYGSGTEEA  300
NSNSFSNLLQ ASRTPVTPFM YISNPRAKQY PSHSYFVVSI TNPF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114839.10.0protein REVEILLE 5-like isoform X2
SwissprotC0SVG52e-98RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A199W4720.0A0A199W472_ANACO; Protein REVEILLE 5
STRINGXP_008794784.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.28e-87MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]