PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013285.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 465aa    MW: 50748.6 Da    PI: 6.2737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013285.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.8e-12414461347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW+  E+e l +av+++G+g+Wk+I +      + Rt+ ++k++w++ 
      Aco013285.1 414 RWSLLEEETLRKAVQEHGKGSWKAILNSYAdifEERTEVDLKDKWRNM 461
                      9********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.072407464IPR017930Myb domain
SuperFamilySSF466892.18E-13409463IPR009057Homeodomain-like
SMARTSM007172.1E-7411464IPR001005SANT/Myb domain
CDDcd116601.12E-17413463No hitNo description
PfamPF002496.2E-10414461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-12414463IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVSSSSSDPT SWWWILDFVL HQPSVPDAVA NALLLTIPLP EPLPASSVPP RIQRQLLLRR  60
LSSSLPLSFT TLRSLDLLHS LFPSPSLAAA YAAVAVHIAA AAAAADFAGT VADLFGARVA  120
ALERCPAAAG LLSDRLRAAG KEMAAAVADP ELRARIMERR DEIREQALEA IRVLVAEQRE  180
AMGPPFLEVA AQVVMGENRA LMRETSPLRN RIANESREIK FDSTLTPEVD KVTNALKSSC  240
ADLQKVVEDP LPDAVVAADE VLNRRSGEME NIEGDGVTNR LVGESSIPTV GKSVETSHSE  300
DSVASEEVAS ALMGLKQGED RRNADGIVHD AGKGVEDPRS EGPSTHTNVA ARPSLMAWNP  360
TARTYEWNDS IDSLSEKSLS PSNKPHLSTP KSRMVSPLKL VESKKVSKRR KFKRWSLLEE  420
ETLRKAVQEH GKGSWKAILN SYADIFEERT EVDLKDKWRN MTRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114653.10.0telomeric repeat-binding factor 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-12MYB_related family protein