PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013304.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 345aa    MW: 37408.9 Da    PI: 9.3182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013304.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-14106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ +  +Rt+ q+ s+ qky
      Aco013304.1 106 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVRTRTPTQVASHAQKY 150
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.40899155IPR017930Myb domain
SuperFamilySSF466891.2E-17100156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17102154IPR006447Myb domain, plants
SMARTSM007178.1E-11103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11106149IPR009057Homeodomain-like
PfamPF002494.9E-12106150IPR001005SANT/Myb domain
CDDcd001673.17E-10106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDEATTHRD SRKERVVRLF GVSIVDGGRR DAAAAEEAEE EEDEEEEEVM RKIKSMGNLV  60
AADAGGGGGS GAAAAGAAEE DGYLSDGGLV RSAKRRRAQG RKRAVPWTEE EHRTFLAGLE  120
KLGKGDWRGI SKNFVRTRTP TQVASHAQKY FLRQSNPNKK KRRSSLFDVG INDQTPTSGN  180
SVSPLSMVKA QEVAEKNNQP VHSAAASSCN TMQFAPQVPE SFPAFPLIGG LTRAQYMDGN  240
NYMQVSIFRT SLDQAILQSS FMSKLKIPHE SPPIFQANST AFTPDFPKLR YTSSPELHQP  300
RPALPTASPS LVESGELELT IAPPQPRSLS KVPSRSSSGA IRVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114803.10.0uncharacterized protein LOC109728718 isoform X1
TrEMBLA0A199UK120.0A0A199UK12_ANACO; Transcription factor DIVARICATA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-32MYB_related family protein