PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013374.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 494aa    MW: 52878.3 Da    PI: 8.8396
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013374.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.61.8e-10213749322374
         GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                  ++ a +     ++++p++R+a+yf+eAL++rl+rs s   ++ +p  +     ++ +  +k++++++P+ kf+hltaNqaIlea++++ r+Hi+D+++
  Aco013374.1 137 HIAAAIPAPPPSSATPTERVAFYFAEALSRRLSRSPSPSPSSASPLLS----PEDFTLCYKTLNDACPYSKFAHLTANQAILEATASSPRIHIVDIGV 230
                  55566666677889********************44444433333333....5899999*************************************** PP

         GRAS 120 sqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl....vakrledl..eleeLrvkpgEalaVnlvl 208
                   qG+QW+aLlqaLa+Rp+g+p  +Ri gv+sp+ g   + +l +tg rL++fA+ l++pfef+++    +  +l+d    +++Lrv+p+E++aVn++l
  Aco013374.1 231 VQGVQWAALLQALATRPAGKPsLVRISGVASPSLGpsAAASLAATGARLRSFAALLDLPFEFHPIstpiY--TLSDAdpGPDSLRVDPDESVAVNFML 326
                  *****************7777478*********9998999************************854322..4444433689**************** PP

         GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvace.gae 304
                  +lh+ll++s +      + L+l ksl P+vv++ e e+d+n++ F++rf+ al yys++fdsle  l+  +  +r+ vEr llgr+i  ++  + g++
  Aco013374.1 327 HLHHLLADSPDPVR---RALRLAKSLAPRVVTLGEYESDLNRAGFADRFAAALAYYSSVFDSLEPALADRAsPDRVRVERLLLGRKILGALGPRdGED 421
                  ******66665555...9*********************************************888775544*******************8652677 PP

         GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  r+er+   e+Wr+ +e +G++pv++s++a++qaklll +++ s  y++ e+  s++ l W +rpL+++SaWr
  Aco013374.1 422 RTERMAAREEWRALMEGSGLEPVRFSNYAVSQAKLLLWNYEySAKYSLVESAPSFLsLAWDGRPLLTLSAWR 493
                  *****************************************9999*********999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.57792471IPR005202Transcription factor GRAS
PfamPF035146.3E-100137493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
LTPFARATAT PEVFPPHSDP LACTRLRAAS PASASRRRLR LDSGWRALIG DSPADGQLRS  60
PSPLPDASDL DLLPLPDPPR PLIPPLSFER PLSPGRAAVP SGASNRPPIR PPSPPSPLLS  120
ILLDCARTPT RTPTGAHIAA AIPAPPPSSA TPTERVAFYF AEALSRRLSR SPSPSPSSAS  180
PLLSPEDFTL CYKTLNDACP YSKFAHLTAN QAILEATASS PRIHIVDIGV VQGVQWAALL  240
QALATRPAGK PSLVRISGVA SPSLGPSAAA SLAATGARLR SFAALLDLPF EFHPISTPIY  300
TLSDADPGPD SLRVDPDESV AVNFMLHLHH LLADSPDPVR RALRLAKSLA PRVVTLGEYE  360
SDLNRAGFAD RFAAALAYYS SVFDSLEPAL ADRASPDRVR VERLLLGRKI LGALGPRDGE  420
DRTERMAARE EWRALMEGSG LEPVRFSNYA VSQAKLLLWN YEYSAKYSLV ESAPSFLSLA  480
WDGRPLLTLS AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1531164932375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104096.10.0scarecrow-like protein 4
SwissprotQ53K161e-149SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A199UWY90.0A0A199UWY9_ANACO; Scarecrow-like protein 4
STRINGOB03G39390.11e-151(Oryza brachyantha)
STRINGSi034954m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-112GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]