PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013415.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 273aa    MW: 29778.9 Da    PI: 6.6769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013415.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022131153123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Aco013415.1 131 FSCNYCQRKFYSSQALGGHQNAH 153
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-6128158No hitNo description
PROSITE profilePS5015711.427131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLSTVVGRAR LPHKLNTSDL SLQLTQVPIE DNMEKSNQEW FELEASESSS QVASNISNQA  60
SSPASVSKED RPTSAALRPS DLDLSLTINA CSSPEANNNA RRNSLTSSSE STSDQNPSHE  120
HNIPPNPSRV FSCNYCQRKF YSSQALGGHQ NAHKRERSLA KRALKLNTFL PFSYSSMSSL  180
PLHGSNLHSL GIKAHSSLHQ GVLERQEGHG GPRFVRGLLG PMPFFAEDDD LGFYWPGSFR  240
QMISDPNLNS NSNDGAVNAL SSAEELDLTL RL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6626355e-60KM662635.1 Ananas bracteatus clone 46514 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103857.11e-175zinc finger protein 4-like
TrEMBLA0A2H3XS293e-71A0A2H3XS29_PHODC; zinc finger protein 4-like
STRINGXP_008787905.15e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-35zinc finger protein 4