PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013421.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARR-B
Protein Properties Length: 772aa    MW: 83429.2 Da    PI: 7.1657
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013421.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.51.9e-25314363151
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ
  Aco013421.1 314 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQ 363
                  79*******************.****************************8 PP
2Response_reg74.83.4e-251302381109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l + +y +v++++++  al+ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k Ga 
   Aco013421.1 130 VLVVDDDVTCLTVLKRMLLQCRY-DVTTCSQAARALTLLRESKggFDVVISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADARTTNVMKGIKHGAC 224
                   89*********************.******************99********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Aco013421.1 225 DYLIKPVRMEELKN 238
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-165110748IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.6E-42127271No hitNo description
SuperFamilySSF521722.28E-35127252IPR011006CheY-like superfamily
SMARTSM004483.2E-29128240IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.532129244IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-22130238IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.84E-26131243No hitNo description
Gene3DG3DSA:1.10.10.602.1E-26311377IPR009057Homeodomain-like
SuperFamilySSF466894.66E-16312364IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-22314364IPR006447Myb domain, plants
PfamPF002495.7E-6316363IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
SVAHRRAGGG PAAREEEQEF GRRVHFLRVS LVVWGSAGGG GLGGGGNGGA DGGTRGVIGR  60
SSGAGRTRRA ASFCVQDGGN VGFGYRYVGE SLKREEEEEE RRGRRWRWWW GSMAEAEEIG  120
SNEFPVGLKV LVVDDDVTCL TVLKRMLLQC RYDVTTCSQA ARALTLLRES KGGFDVVISD  180
VHMPDMDGFR LLELVGLEMD LPVIMMSADA RTTNVMKGIK HGACDYLIKP VRMEELKNIW  240
QHVVRKKWSD NRDNEHSGSL EDSGSNKRLI NETEYASSVN EGADDSSKSQ KKKREVKEEE  300
DGEQENGDPS SSKKPRVVWS VELHQQFVNA VNQLGIDKAV PKRILELMNV PGLTRENVAS  360
HLQIAEFVQK FRLYLKRLSG VAQHHGGLPS NSLSSPASNI KIGPLGRLDL QALAASGQIP  420
PQTLAALQDE LLGQVSPMYR QPARQVPVQR EIAFGQPLFK CQTSVAQHFP TQSSVTVGGM  480
TSFANCSNNL NFEDSLSNSR NSNMLSQIFQ QQQQQQQQQQ QLQTNSLTSE PLSSTKVQPS  540
CLILPSQTLD TFQDPLLVPS QPSTSLQGGN DSCLLNQNST VVAHSLANLQ GGNNPGIINH  600
NCKSAYSQAS TSFNTGNSPF LMKGNSTLIS SQPSATLRPE NNPTTLGQYS IYNSGSAKAD  660
SNLLSFQSKN TRFGVGQFVD EGISGLTSAP LSTSTDGNIV PGSGSSVISG KLDDQGQKRK  720
LGFVGKGTCI PSRFAVDDIE SPTSSFTHGN TFVSNGGDLL SSDIFGFNGQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20310379164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6674881e-177KM667488.1 Ananas bracteatus clone 52902b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104443.10.0two-component response regulator ORR21-like
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A199UWT20.0A0A199UWT2_ANACO; Two-component response regulator ORR21
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-102response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]