PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013437.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 232aa    MW: 26027.3 Da    PI: 6.7328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013437.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-153171547
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +  E++l +d++ +lG++ W++I ++++ gRt++++k++w+++
      Aco013437.1 31 SDSEEKLVIDLHSRLGNR-WSKITSYLP-GRTDNEIKNHWNTH 71
                     788***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.217121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-5820IPR009057Homeodomain-like
SuperFamilySSF466891.25E-20881IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-222176IPR009057Homeodomain-like
PROSITE profilePS5129424.2872276IPR017930Myb domain
SMARTSM007174.9E-132674IPR001005SANT/Myb domain
PfamPF002494.0E-133171IPR001005SANT/Myb domain
CDDcd001675.22E-103172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MHGVGLLRCG KSCRLRWTNY LRPDIKRGLL SDSEEKLVID LHSRLGNRWS KITSYLPGRT  60
DNEIKNHWNT HIKKKLRKMG IDPLTHKPIV PSSGEGVHND HQQQPPVRVS ATDRKDESGD  120
QLDLAADVGE LVDGKAAHDF CTDEVPMMEP HEIIIPCGTA SAASSCSYST SSSSASVASS  180
NSILENNKAK EMKQQQQLQC MEWAESSMSF WDMDTDFTDW NLMHTHKYQT M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2087640108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103956.11e-163protein ODORANT1-like
TrEMBLA0A199UGX61e-113A0A199UGX6_ANACO; Protein ODORANT1
STRINGGSMUA_Achr10P29970_0016e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.17e-55myb domain protein 43