PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013561.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 227aa MW: 24183.5 Da PI: 8.3242

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013561.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.6	7.3e-32	27	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aC+ lrr+C ++Cv+ap+fp +qp++fa+v++++G+ nv++ll++lp+e+r++a++sl+yeA +++rd v Ga+gv++ ++++l++l+ el ++ Aco013561.1 27 PCTACRQLRRGCRPGCVFAPCFPPSQPNRFAIVRRVYGVGNVQRLLEELPPERRPAATDSLAYEASMQLRDRVFGAAGVVSLYEHRLHSLQLELLCAR 124 7******************************************************************************************9998877 PP DUF260 99 ee 100 +e Aco013561.1 125 AE 126 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.525	26	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-30	27	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MANEAAANSA LAGGVAAAAG RPAIVHPCTA CRQLRRGCRP GCVFAPCFPP SQPNRFAIVR 60 RVYGVGNVQR LLEELPPERR PAATDSLAYE ASMQLRDRVF GAAGVVSLYE HRLHSLQLEL 120 LCARAELSTY ECSNRNDANR VPQITNQKFS KVCGGRGGGW GDGWYEAMRV EGCVSEAKIA 180 ERLAAATDAA VVSIRPVEDR IAATMTATAV AKSSNQIEDA ANNQII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-33	17	132	1	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-33	17	132	1	116	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111049.1	1e-165	LOB domain-containing protein 6-like
TrEMBL	A0A199VJA9	1e-123	A0A199VJA9_ANACO; LOB domain-containing protein 6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-28	LBD family protein

Link Out ? help Back to Top
Phytozome	Aco013561.1