PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013595.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 299aa MW: 33508.8 Da PI: 7.0002

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013595.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.3	3.7e-50	8	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yL++k++g+++ + +i++vd+yk++PwdLp ++k +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v + Aco013595.1 8 LPPGFRFHPTDEELVMHYLCRKCAGSPIFA-PIIADVDLYKYDPWDLPGMAKYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGT---- 100 79***********************888.78***********8888899*********************************88.... PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +kk Lvfy g+apkgekt+W+mheyrl Aco013595.1 101 --AIKKALVFYAGKAPKGEKTNWIMHEYRL 128 ..89**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-60	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	53.769	8	158	IPR003441	NAC domain
Pfam	PF02365	1.4E-26	9	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDGGDLILPP GFRFHPTDEE LVMHYLCRKC AGSPIFAPII ADVDLYKYDP WDLPGMAKYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPVGT AIKKALVFYA GKAPKGEKTN 120 WIMHEYRLAH VDRSARKKDY STNTLRLDDW VLCRLYNKKG VVERPHAGST KPGAAPNPVQ 180 LPQRPKTEHV TAPHAHVPAH QELMDLVYHD PSEPLPRLYA ESSSSEHVRS PDPATCEALE 240 EAESRHEQGT WGMLWEKALG GSFNYDDATE IAFAVPPFSP AFPDAAFHDA LSYLQRPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-75	5	164	12	174	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111089.1	0.0	NAC transcription factor 32-like
Swissprot	Q39013	1e-103	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A199UL39	0.0	A0A199UL39_ANACO; NAC domain-containing protein 48
STRING	XP_008781592.1	1e-117	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3417	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-101	NAC family protein

Link Out ? help Back to Top
Phytozome	Aco013595.1

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]