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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Aco013645.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family | GeBP | ||||||||
| Protein Properties | Length: 157aa MW: 17933.4 Da PI: 10.7623 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 55.2 | 1.9e-17 | 2 | 98 | 14 | 97 |
DUF573 14 vlLqGlidfkaktgk........spsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWg 97
++L G+++f +++g+ + ++d+ f+e ++ ++ ++ ++ ql +K+rrLK+K++ ++ + +f+++hd+ +fel++kiW
Aco013645.1 2 AILEGFLEFVTERGTptrapdhhHHHHDTAPFFERIRPRLRrADLNRAQLADKLRRLKRKYRAAASRlaaaPSAAAAAAFRTPHDRATFELARKIWS 98
69************9999888755667**********9995389**********************9766545677889*****************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04504 | 4.7E-17 | 2 | 98 | IPR007592 | Protein of unknown function DUF573 |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 157 aa Download sequence Send to blast |
MAILEGFLEF VTERGTPTRA PDHHHHHHDT APFFERIRPR LRRADLNRAQ LADKLRRLKR 60 KYRAAASRLA AAPSAAAAAA FRTPHDRATF ELARKIWSPA TPAPEPEEGR KGMEEKWREQ 120 QILELEVLLK RAELLHEHFS AKLEEMRSTT TTTSSN* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020101254.1 | 1e-108 | probable transcription factor At4g00390 | ||||
| TrEMBL | A0A199UHK4 | 2e-66 | A0A199UHK4_ANACO; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP974 | 37 | 123 |
| Link Out ? help Back to Top | |
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| Phytozome | Aco013645.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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