PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013681.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 547aa MW: 61484.8 Da PI: 8.2749

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013681.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.2e-21	126	211	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY +Y++++GF v++++s++ +g+ +++tf+C keg+++ +k + r+r+ ++gC+a++++k ++ w+++ + l+HnH+l Aco013681.1 126 FYTAYGYRTGFGVTRRTSHSM--HGKKYRQTFTCCKEGNPRVKKAV--VKCRRRPIVKCGCRAMMVIKDPAlKDSWVIDYVILKHNHPLD 211 9***********9998887..7788********9997765..99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-18	126	212	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.075	287	323	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0026	298	325	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MVVIEPNPDA EDRRRRRTNL RAPGAPPEAA AAPPPRGVAG AGDDGGDSDS DESPESARNN 60 MRIKESSSGV EPAEDRSANS SEECSAGKEN GMAAVAHEEP TTSAADDALV PKVGMRFKSI 120 EEAFLFYTAY GYRTGFGVTR RTSHSMHGKK YRQTFTCCKE GNPRVKKAVV KCRRRPIVKC 180 GCRAMMVIKD PALKDSWVID YVILKHNHPL DPDRVRFMKC FRELPITIKR QLHVNEFQGT 240 LPTMPINAKF QDEVRHLIQC VCTRVERNGP IVTYMVTELI ESRQLDYKVT YNSAEHEVWC 300 ICCSFEYSGI LCRHALCVLR QEFVVILPSK YVLARWRKDF KILQAFNSTP QMALTGETGN 360 YDELVARGQQ YLLDIADFAA FNHDMKVYAL NALREARDKV VKQEVSLGDR TVDDDSLHNT 420 LLASNICIPP NMDVQSDGLF LASATKVFDS PRAHPKVPHK KRPVSQRERA SEELKKQRRE 480 NDSIIASKNV GLHVLENQSN AAVPMTQFTT QENFSVQVGS DPSPWLYNPS YFYWHGAGIQ 540 DPTRRT*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MVVIEPNPDA EDRRRRRTNL RAPGAPPEAA AAPPPRGVAG AGDDGGDSDS DESPESARNN  60
MRIKESSSGV EPAEDRSANS SEECSAGKEN GMAAVAHEEP TTSAADDALV PKVGMRFKSI  120
EEAFLFYTAY GYRTGFGVTR RTSHSMHGKK YRQTFTCCKE GNPRVKKAVV KCRRRPIVKC  180
GCRAMMVIKD PALKDSWVID YVILKHNHPL DPDRVRFMKC FRELPITIKR QLHVNEFQGT  240
LPTMPINAKF QDEVRHLIQC VCTRVERNGP IVTYMVTELI ESRQLDYKVT YNSAEHEVWC  300
ICCSFEYSGI LCRHALCVLR QEFVVILPSK YVLARWRKDF KILQAFNSTP QMALTGETGN  360
YDELVARGQQ YLLDIADFAA FNHDMKVYAL NALREARDKV VKQEVSLGDR TVDDDSLHNT  420
LLASNICIPP NMDVQSDGLF LASATKVFDS PRAHPKVPHK KRPVSQRERA SEELKKQRRE  480
NDSIIASKNV GLHVLENQSN AAVPMTQFTT QENFSVQVGS DPSPWLYNPS YFYWHGAGIQ  540
DPTRRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	RRRRRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020101912.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A199UWX0	0.0	A0A199UWX0_ANACO; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_008808221.1	1e-73	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	7e-21	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Aco013681.1