PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013878.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 178aa    MW: 19911.7 Da    PI: 10.5053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013878.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.31e-064767526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C+ f++ G C++ d C +aHg
  Aco013878.1 47 PCPKFRK-GSCHHSDACEYAHG 67
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2064269IPR000571Zinc finger, CCCH-type
SMARTSM003560.00694268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-44368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLLILDKAKD RAIAPVYSHD WTECPFVHPG ENARRRDPRK FLYSCVPCPK FRKGSCHHSD  60
ACEYAHGVFE SWLHPAQYRT RLCKDETGCA RRVRPQARRA PRHQPLPRLR LRRPRPSPPS  120
SSNDAAAALI LFQQQQQTLP PPSSSSPSSC CARQSSTRGS APRAACTVNS VITPLHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793149.22e-53zinc finger CCCH domain-containing protein 33
TrEMBLA0A199VY984e-52A0A199VY98_ANACO; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2H3Y4595e-52A0A2H3Y459_PHODC; zinc finger CCCH domain-containing protein 33
STRINGXP_008793149.15e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.12e-46C3H family protein