PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014027.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 680aa    MW: 75063 Da    PI: 7.3816
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014027.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.7e-07101124626
                  -SGGGGTS...--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartG...tCkyGdrCkFaHg 26 
                  C   ar+G    C+yGd+C+F+H+
  Aco014027.1 101 CIEVARSGnvdSCNYGDKCRFSHD 124
                  88999999999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006421.4E-4100124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.437100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.155139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.4E-72323566IPR013785Aldolase-type TIM barrel
SuperFamilySSF513952.78E-64327640No hitNo description
CDDcd028011.21E-90327562No hitNo description
PfamPF012076.2E-50330597IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360411429IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDAAAPVAEG SEANPGASPP NHQPDSGGGG GRAARPTPEE LVARSIAPVK PEFLCPPPVR  60
SAADAGDGAA AAASGVVKEK KSRRQMKRER KEEQKSTLHI CIEVARSGNV DSCNYGDKCR  120
FSHDINAYLA QKPADFEGTC PFINAEESCP YGLTCRFLNS HKENIPSESQ KISRKSHEIN  180
GLSKNLQKLL WKNKVDFPKA DAQLKLLGLK GGKSKKEKSK VDNVENQQDA FDGSNNLCND  240
DKSEMLACKD DDASCVDVSD EARPLKKTKG EVAENGGNDI ANGSCCMETI LTDGTENSSL  300
NTLNSCKVNP SPKVHAREKK LIDFRGKLYL APLTTVGNLP FRRICKVLGA DVTCGEMAMC  360
TNLLQGQVSE WALLRRHSSE DLFGVQICGA YPDTVARTVE LVESQCSVDF IDINMGCPID  420
IIVNKGAGSS LLMKPMRMKG IIQAASNTFE KPLTVKVRTG YFEGRNRIDS LVSDIYEWGA  480
SALTIHGRSR QQRYSKLADW DYIYQCARKA PSNLHVLGNG DVFSYTDWNK HASDCPELSS  540
CMIARGALIK PWIFTEIKEQ RHWDITSGER FNILKDFVRF GLEHWGSDTK GVETTRHFLL  600
EWLSYTYRYI PVGLLDVVPQ RLNWRPPSFY GRDDLETLMA SDSAADWIRI SEMLLGKVPE  660
GFTFAPKHKS NAYDRAENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A2e-2632455827257tRNA-dihydrouridine synthase B
6ei9_B2e-2632455827257tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6633430.0KM663343.1 Ananas bracteatus clone 47691 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083785.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A199VCK70.0A0A199VCK7_ANACO; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_008781781.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]