PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco014053.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SRS

Protein Properties

Length: 201aa MW: 19791 Da PI: 6.661

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014053.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	90.9	2.7e-28	52	139	69	154
DUF702 69 eaaskrkrelkskkqsalsstk.lssaes.kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++skr rel +++ +a+ +++ ++ a+s + + s+P+evss+avfrc+rvs +d++++e+aYqtav+igGhvfkGiLyd+G+++ Aco014053.1 52 VDSSKRARELCAARPTAIVTATaTALASSgGGGTVAGSFPSEVSSAAVFRCIRVSPMDEADDEFAYQTAVNIGGHVFKGILYDHGPDS 139 56788888886665555544330333333134566778************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-26	49	138	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.5E-24	90	137	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
LSLGTPSTRH AGAGPGFGGP GPAQPPSSLQ WDVMGRPNKQ QCCGGGGGSG GVDSSKRARE 60 LCAARPTAIV TATATALASS GGGGTVAGSF PSEVSSAAVF RCIRVSPMDE ADDEFAYQTA 120 VNIGGHVFKG ILYDHGPDSH QYGGEPSSSP AAANAAAALA MSSSAAAMAS AGLLDPSAVY 180 PAPISAFMAG TQFFPQHPRP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085471.1	1e-116	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A199VCX6	1e-103	A0A199VCX6_ANACO; Protein SHORT INTERNODES
STRING	GSMUA_Achr4P17960_001	2e-46	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-24	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Aco014053.1