PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014348.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 197aa    MW: 22553.4 Da    PI: 10.5671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014348.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32119177159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++++prsYYrC++ +C+vkk+versa+dp++v++tYeg+H h+
  Aco014348.1 119 LDDGYKWRKYGQKVVKNTQHPRSYYRCSQDNCRVKKRVERSADDPRMVITTYEGRHVHS 177
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33104177IPR003657WRKY domain
SuperFamilySSF1182907.98E-29111178IPR003657WRKY domain
PROSITE profilePS5081129.493114179IPR003657WRKY domain
SMARTSM007746.0E-37119178IPR003657WRKY domain
PfamPF031061.2E-25120176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVAHHQIIKL LLLQLLQPGE QALTYGHGRK LEGPLLSSKR TIIGAEHQIK MNANNNNNNN  60
NNKDNNNNNT NNSSVNYKST SNTINALSVG GVRMKKVKKR RKVRDPRFCF KTMSEVDVLD  120
DGYKWRKYGQ KVVKNTQHPR SYYRCSQDNC RVKKRVERSA DDPRMVITTY EGRHVHSPSH  180
EDVDQAQAAS QVSFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-28110176874Probable WRKY transcription factor 4
2lex_A8e-28110176874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103KVKKRRKVR
297101KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087978.11e-147probable WRKY transcription factor 13
RefseqXP_020087979.11e-147probable WRKY transcription factor 13
SwissprotQ9SVB74e-57WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A199UXG95e-83A0A199UXG9_ANACO; Putative WRKY transcription factor 13
STRINGXP_008793465.11e-70(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-50WRKY DNA-binding protein 13