PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014364.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 276aa    MW: 31505.5 Da    PI: 4.7906
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014364.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.2e-1970122456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++++++q+e Le+ Fe ++ +  e++ eLAk+lgL+ +qV +WFqNrRa++k
  Aco014364.1  70 KRRLSDDQIEFLERSFEVENRLEPERKIELAKELGLEPKQVAIWFQNRRARWK 122
                  5589************************************************9 PP
2HD-ZIP_I/II125.52.4e-4069158291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrls++q+++LE+sFe e++LeperK ela+eLgl+p+qva+WFqnrRAR+k kqlEkdy+aLk +yd+lk + e L ke+e+L++e+
  Aco014364.1  69 KKRRLSDDQIEFLERSFEVENRLEPERKIELAKELGLEPKQVAIWFQNRRARWKIKQLEKDYDALKCSYDSLKVNYEGLCKEKEDLQAEV 158
                  9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-1967128IPR001356Homeobox domain
CDDcd000861.93E-1869125No hitNo description
PROSITE profilePS5007116.92569124IPR001356Homeobox domain
SuperFamilySSF466896.42E-1969133IPR009057Homeodomain-like
PfamPF000465.4E-1770122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-1971131IPR009057Homeodomain-like
PRINTSPR000312.8E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000312.8E-6104120IPR000047Helix-turn-helix motif
PfamPF021832.7E-14124165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMAKEMMIYK GSNTATLLPH EGVSAEGFEA LFSPVGFYGS RAMINFDETP QRKRFSDEDS  60
DEFTHLPLKK RRLSDDQIEF LERSFEVENR LEPERKIELA KELGLEPKQV AIWFQNRRAR  120
WKIKQLEKDY DALKCSYDSL KVNYEGLCKE KEDLQAEVLS LAKKLGVENM FSLSTQSFEF  180
EKTNKISQKP KKILVSSEGG GSDDQNLMVS KPEDLISSNS VVFNSCESPQ HTESSHCMEK  240
GNSVLSDPTV DSSNLQGYSC KYEIPFVDQD FLFWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15171RKRFSDEDSDEFTHLPLKKRR
2116124RRARWKIKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089101.10.0homeobox-leucine zipper protein ATHB-54-like
TrEMBLA0A199UWW60.0A0A199UWW6_ANACO; Homeobox-leucine zipper protein HAT5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-44homeobox 1