PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014401.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 881aa    MW: 97056.7 Da    PI: 8.2675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014401.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91.1e-19349449199
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W ++++y  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+
  Aco014401.1 349 FEKMLSASDAGRIGRLVLPKKCAEAYfpAINQPEGLPLKVQDASGKEWVFQFRYwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLVM 444
                  89**************************777778889*****************89999999***9.********************987.7777887 PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  +++++
  Aco014401.1 445 GFRKA 449
                  77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-30340451IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-20346448IPR015300DNA-binding pseudobarrel domain
CDDcd100177.23E-23347448No hitNo description
PROSITE profilePS5086311.505349450IPR003340B3 DNA binding domain
SMARTSM010192.3E-22349450IPR003340B3 DNA binding domain
PfamPF023621.0E-16349448IPR003340B3 DNA binding domain
PROSITE profilePS5105012.279599649IPR011124Zinc finger, CW-type
PfamPF074965.4E-9604646IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MSSPQTPAAV AAPPKICFNT LCKEKLEATW RKGWRLRSGS YADLCARCFC TYEQGMFCET  60
FHSDVAGWRN CETCGKRVHC GCIVSFHTYA LLDTGGVDCI TCARKSFVLT PNQMLHVKNW  120
KPPTGPFPGH WMWNASSKLQ QRLQYEFDRP SNIEKSIPGI RSSISAQEKK YEDLQERITS  180
STQNNQIIRE RYANGDPSFS CNIYHRDDGN PTAGENDPTS KGLISDPCLG SSSGVNPEKH  240
PNFLKEDSSP VLLGLAAQFS SPSNGGKDAP RAVPAQPQRQ VAAASSQKQF YSHNAVDVET  300
QGQIRNGRPR MDARARTQLL PRYWPRITDQ ELQQITGDSS SNSVITPLFE KMLSASDAGR  360
IGRLVLPKKC AEAYFPAINQ PEGLPLKVQD ASGKEWVFQF RYWPNNNSRM YVLEGVTPCI  420
QSMQLQAGDT VTFSRIDPEG KLVMGFRKAS SISAEQDAQT VKSGPEGGNE STGVDSNANI  480
PLRPPKGIIE SRNPSSHGDQ ATLPKFDKGG FIQKDGPLGK SSHGPSKRKG SSLGSKSKRL  540
RIENEDSMEL KLSWEEAQEL LRPPPNSVPS VVVIEGHEFE EFEEAPVLGK RTYFITNLVG  600
DSHQWAQCEE CSKWRKLPVD ALLPYRFLCS DNKWEPERSS CLSAQELSLE QLAELIPTKS  660
GPSRRPKVKV EAENIEVSDG LDTLANLAIL GEAEAAFPSS SSASQQPTTK HPRHRPGCTC  720
IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMLRREKR QEAETARKQQ MQKELQQQLL  780
PPATGVLLPQ PLGHDPSSTG SIINTNGNGN GDGNSVSPKK VVMSNEGLAD EVLEHKKVMV  840
PLSSPLKAQI DLNIQPEREE ESSPKSDALG IMKLIRDPAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-623254511125B3 domain-containing transcription repressor VAL1
5yzz_C2e-623254511125B3 domain-containing transcription repressor VAL1
5z00_C2e-623254511125B3 domain-containing transcription repressor VAL1
5z00_G2e-623254511125B3 domain-containing transcription repressor VAL1
5z00_K2e-623254511125B3 domain-containing transcription repressor VAL1
5z00_M2e-623254511125B3 domain-containing transcription repressor VAL1
6j9a_A2e-623254512126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1746759KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6676491e-166KM667649.1 Ananas bracteatus clone 53067 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092483.10.0B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A199UZA60.0A0A199UZA6_ANACO; B3 domain-containing protein
STRINGXP_008806760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-131HSI2-like 1