PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014442.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 400aa    MW: 43475.5 Da    PI: 6.3898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014442.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-052913281254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Aco014442.1 291 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 328
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-6289332No hitNo description
SuperFamilySSF474591.2E-11289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9293333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MADDLDARIC RGGSWWFNPG PSSSGGGGGF VDAPGSVSCS TAIADAPRGS ALPSDHVGSS  60
FADSFSLSAH FMDWGHDQLR SSGKAENSFH AMLQEDMSTR PYNFRQGSIE PELEPSMSQN  120
FLLDHHQHHP SSTNDPAPDC SVITSYALAP TAYGCPPVMH LQTLLEADAK PQQSVYYDQP  180
TETPMATAFH GTNWPVLKDQ EGSSNPLHFS NNTPFWNASA TAVNEAKSGF YPNSVPSQFV  240
MPAFEPKLPS CSNFMVKSNR DASMPKKSGS ETALKKPRVE APSPLPTFKV RKEKLGDRIT  300
ALQQLVSPFG KTDTASVLHE AIEYIKFLHN QVGLLSTPYL KNGQPMQQQQ SAEKSKEGDE  360
SKKDLRSRGL CLVPVPSTYP MASEATVEFW HPTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091643.10.0transcription factor bHLH123-like
TrEMBLA0A2H3XX261e-121A0A2H3XX26_PHODC; transcription factor bHLH123-like
STRINGXP_008789835.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-54bHLH family protein