PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014580.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 226aa    MW: 24812.9 Da    PI: 6.0193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-122867445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +T+eEd ++  + +q G   W+ Ia+ ++ gRt+ ++k++w+
      Aco014580.1 28 FTEEEDRIISSLYNQKGRC-WSVIAAQLP-GRTDLSIKNYWN 67
                     9****************77.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.114119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-9531IPR009057Homeodomain-like
SuperFamilySSF466892.1E-20574IPR009057Homeodomain-like
PROSITE profilePS5129419.1132074IPR017930Myb domain
SMARTSM007172.6E-112472IPR001005SANT/Myb domain
PfamPF002493.1E-102767IPR001005SANT/Myb domain
CDDcd001671.27E-92870No hitNo description
Gene3DG3DSA:1.10.10.609.7E-173270IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLGLNRCGRS CRSRWLNYLR PGLKIGGFTE EEDRIISSLY NQKGRCWSVI AAQLPGRTDL  60
SIKNYWNCKL SKKVVSSKNK MLTLRPKPDR LPSAPITPSS TETQKPDHLS FSRKPSTSDG  120
LGSKLDTDES AQKTKLLTSS SSGELISESS SSSANVASEN LVADAGASAL VNTECRPPEF  180
NELVDWCVMS PPRDLVIDYS YSSSIIDGLE DINSSDMLLS DEPWW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1767437105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-1767460128MYB TRANSFORMING PROTEIN
1mse_C2e-1767437105C-Myb DNA-Binding Domain
1msf_C2e-1767437105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094690.11e-162myb-related protein 330-like
TrEMBLA0A199UI981e-161A0A199UI98_ANACO; Transcription factor RAX3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-30myb domain protein 36