PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco014680.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 169aa MW: 19405.3 Da PI: 9.434

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+kkv ++ ++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e+++ +++ Aco014680.1 18 LPPGFRFHPTDEELITHYLAKKVVDEGFSP-RAIGEVDLNKCEPWELPCRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDREIYR-GRT 113 79***********************999.88***********989999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy grapkgek++Wvmheyrle Aco014680.1 114 LVGMKKTLVFYGGRAPKGEKSNWVMHEYRLE 144 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-61	15	148	IPR003441	NAC domain
PROSITE profile	PS51005	54.615	18	168	IPR003441	NAC domain
Pfam	PF02365	2.2E-30	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDHGGIVLNK VDETTMDLPP GFRFHPTDEE LITHYLAKKV VDEGFSPRAI GEVDLNKCEP 60 WELPCRAKMG EKEWYFFCVR DRKYPTGLRT NRATEAGYWK ATGKDREIYR GRTLVGMKKT 120 LVFYGGRAPK GEKSNWVMHE YRLEGKYSPY NLPKTAKVQP PYPLANIT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	14	143	13	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	14	143	13	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	14	143	13	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	14	143	13	142	NO APICAL MERISTEM PROTEIN
3swm_A	9e-52	14	143	16	145	NAC domain-containing protein 19
3swm_B	9e-52	14	143	16	145	NAC domain-containing protein 19
3swm_C	9e-52	14	143	16	145	NAC domain-containing protein 19
3swm_D	9e-52	14	143	16	145	NAC domain-containing protein 19
3swp_A	9e-52	14	143	16	145	NAC domain-containing protein 19
3swp_B	9e-52	14	143	16	145	NAC domain-containing protein 19
3swp_C	9e-52	14	143	16	145	NAC domain-containing protein 19
3swp_D	9e-52	14	143	16	145	NAC domain-containing protein 19
4dul_A	1e-51	14	143	13	142	NAC domain-containing protein 19
4dul_B	1e-51	14	143	13	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111122.1	1e-114	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-90	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A199W7L9	1e-113	A0A199W7L9_ANACO; NAC domain-containing protein 100
STRING	XP_008802569.1	2e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-93	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Aco014680.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]